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  <section id="timsconvert">
<h1>timsconvert<a class="headerlink" href="#timsconvert" title="Link to this heading">¶</a></h1>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="timsconvert.html">timsconvert package</a><ul>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#submodules">Submodules</a></li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.arguments">timsconvert.arguments module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.arguments.args_check"><code class="docutils literal notranslate"><span class="pre">args_check()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.arguments.get_args"><code class="docutils literal notranslate"><span class="pre">get_args()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.classes">timsconvert.classes module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertBafData"><code class="docutils literal notranslate"><span class="pre">TimsconvertBafData</span></code></a><ul>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertBafData.subset_ms1_frames"><code class="docutils literal notranslate"><span class="pre">TimsconvertBafData.subset_ms1_frames()</span></code></a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertTdfData"><code class="docutils literal notranslate"><span class="pre">TimsconvertTdfData</span></code></a><ul>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertTdfData.subset_ms1_frames"><code class="docutils literal notranslate"><span class="pre">TimsconvertTdfData.subset_ms1_frames()</span></code></a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertTsfData"><code class="docutils literal notranslate"><span class="pre">TimsconvertTsfData</span></code></a><ul>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.classes.TimsconvertTsfData.subset_ms1_frames"><code class="docutils literal notranslate"><span class="pre">TimsconvertTsfData.subset_ms1_frames()</span></code></a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.constants">timsconvert.constants module</a></li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.convert">timsconvert.convert module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.convert.clean_up_logfiles"><code class="docutils literal notranslate"><span class="pre">clean_up_logfiles()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.convert.convert_raw_file"><code class="docutils literal notranslate"><span class="pre">convert_raw_file()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.data_input">timsconvert.data_input module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.data_input.check_for_multiple_analysis"><code class="docutils literal notranslate"><span class="pre">check_for_multiple_analysis()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.data_input.dot_d_detection"><code class="docutils literal notranslate"><span class="pre">dot_d_detection()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.data_input.schema_detection"><code class="docutils literal notranslate"><span class="pre">schema_detection()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.parse">timsconvert.parse module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_lcms_baf"><code class="docutils literal notranslate"><span class="pre">parse_lcms_baf()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_lcms_tdf"><code class="docutils literal notranslate"><span class="pre">parse_lcms_tdf()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_lcms_tsf"><code class="docutils literal notranslate"><span class="pre">parse_lcms_tsf()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_maldi_plate_map"><code class="docutils literal notranslate"><span class="pre">parse_maldi_plate_map()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_maldi_tdf"><code class="docutils literal notranslate"><span class="pre">parse_maldi_tdf()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_maldi_tdf_iprm"><code class="docutils literal notranslate"><span class="pre">parse_maldi_tdf_iprm()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.parse.parse_maldi_tsf"><code class="docutils literal notranslate"><span class="pre">parse_maldi_tsf()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.timestamp">timsconvert.timestamp module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.timestamp.get_iso8601_timestamp"><code class="docutils literal notranslate"><span class="pre">get_iso8601_timestamp()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.timestamp.get_timestamp"><code class="docutils literal notranslate"><span class="pre">get_timestamp()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.timsconvert_gui_template">timsconvert.timsconvert_gui_template module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow"><code class="docutils literal notranslate"><span class="pre">Ui_TimsconvertGuiWindow</span></code></a><ul>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.populate_table"><code class="docutils literal notranslate"><span class="pre">Ui_TimsconvertGuiWindow.populate_table()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.retranslateUi"><code class="docutils literal notranslate"><span class="pre">Ui_TimsconvertGuiWindow.retranslateUi()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.setupUi"><code class="docutils literal notranslate"><span class="pre">Ui_TimsconvertGuiWindow.setupUi()</span></code></a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert.write">timsconvert.write module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.get_spectra_count"><code class="docutils literal notranslate"><span class="pre">get_spectra_count()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.update_spectra_count"><code class="docutils literal notranslate"><span class="pre">update_spectra_count()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_lcms_chunk_to_mzml"><code class="docutils literal notranslate"><span class="pre">write_lcms_chunk_to_mzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_lcms_mzml"><code class="docutils literal notranslate"><span class="pre">write_lcms_mzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_maldi_dd_mzml"><code class="docutils literal notranslate"><span class="pre">write_maldi_dd_mzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_maldi_ims_chunk_to_imzml"><code class="docutils literal notranslate"><span class="pre">write_maldi_ims_chunk_to_imzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_maldi_ims_imzml"><code class="docutils literal notranslate"><span class="pre">write_maldi_ims_imzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_maldi_ims_iprm_imzml"><code class="docutils literal notranslate"><span class="pre">write_maldi_ims_iprm_imzml()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_ms1_spectrum"><code class="docutils literal notranslate"><span class="pre">write_ms1_spectrum()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_ms2_spectrum"><code class="docutils literal notranslate"><span class="pre">write_ms2_spectrum()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="timsconvert.html#timsconvert.write.write_mzml_metadata"><code class="docutils literal notranslate"><span class="pre">write_mzml_metadata()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="timsconvert.html#module-timsconvert">Module contents</a></li>
</ul>
</li>
</ul>
</div>
</section>


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<li class="toctree-l1"><a class="reference internal" href="introduction.html">Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="local.html">GUI Usage</a></li>
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<li class="toctree-l1"><a class="reference internal" href="timsconvert.html">TIMSCONVERT Source Code</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Modules</a><ul>
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